About: Molecular characterization and genogrouping of VP1 of aquatic birnavirus GC1 isolated from rockfish Sebastes schlegeli in Korea

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About: Molecular characterization and genogrouping of VP1 of aquatic birnavirus GC1 isolated from rockfish Sebastes schlegeli in Korea Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Molecular characterization and genogrouping of VP1 of aquatic birnavirus GC1 isolated from rockfish Sebastes schlegeli in Korea
Creator	Gang, Jun Heo, Jeong, Byung Joh, Seong Kang, Sung Kim, Byoung Kwon, Jun Lee, Kyung Shon, Chae
source	Medline; PMC
abstract	The cDNA nucleotide sequence of genome segment B encoding the VP1 protein was determined for the aquatic birnavirus GC1 isolated from the rockfish Sebastes schlegeli in Korea. The VP1 protein of GC1 contains a 2,538 bp open reading frame, which encodes a protein comprising 846 amino acid residues that has a predicted MW of 94 kDa. The sequence contains 6 potential Asn-X-Ser/Thr motifs. Eight potential Ser phosphorylation sites and 1 potential Tyr phophorylation site were also identified. GC1 contains the Leu-Lys-Asn (LKN) motif instead of the typical Gly-Asp-Asp (GDD) motif found in other aquatic birnaviruses. We also identified the GLPYIGKT motif, the putative GTP-binding site at amino acid position 248. In total, the VP1 regions of 22 birnavirus strains were compared for analyzing the genetic relationship among the family Birnaviridae. Based on the deduced amino acid sequences, GC1 was observed to be more closely related to the infectious pancreatic necrosis virus (IPNV) from the USA, Japan, and Korea than the IPNV from Europe. Further, aquatic birnaviruses containing GC1 and IPNV have genogroups that are distinct from those in the genus Avibirnaviruses and Entomo-birnaviruses. The birnavirusstrains were clustered into 5 genogroups based on their amino acid sequences. The marine aquatic birnaviruses (MABVs) containing GC1 were included in the MABV genogroup; the IPNV strains isolated from Korea, Japan, and the USA were included in genogroup 1 and the IPNV strains isolated primarily from Europe were included in genogroup 2. Avibirnaviruses and entomobirnaviruses were included in genogroup 3 and 4, respectively.
has issue date	2008-03-31(xsd:dateTime)
bibo:doi	10.4142/jvs.2008.9.1.85
bibo:pmid	18296892
has license	no-cc
sha1sum (hex)	dd6c1a719bd75ba7fb7c62291a676b39c99bb0bc
schema:url	https://doi.org/10.4142/jvs.2008.9.1.85
resource representing a document's title	Molecular characterization and genogrouping of VP1 of aquatic birnavirus GC1 isolated from rockfish Sebastes schlegeli in Korea
has PubMed Central identifier	PMC2839116
has PubMed identifier	18296892
schema:publication	J Vet Sci
resource representing a document's body	covid:dd6c1a719bd75ba7fb7c62291a676b39c99bb0bc#body_text
is schema:about of	named entity 'VETERINARY SCIENCE' named entity 'Korea' named entity 'potential' named entity 'potential' named entity 'regions' named entity 'genetic relationship' named entity 'amino acid' named entity 'family' named entity 'Veterinary Science' named entity 'GC1' named entity 'MOLECULAR' named entity 'A PROTEIN' named entity 'POTENTIAL' named entity 'THEIR' named entity 'HAVE' named entity 'TOTAL' named entity 'CONTAINING' named entity 'SER' named entity 'PHOSPHORYLATION SITES' named entity 'AVIBIRNAVIRUSES' named entity 'KDA' named entity 'SEBASTES SCHLEGELI' named entity 'TYR' named entity 'AMINO ACID SEQUENCES' named entity 'ASN' named entity 'INCLUDED' named entity 'SEGMENT' named entity 'ISOLATED' named entity 'ASP-ASP' named entity 'GENOME' named entity 'JAPAN' named entity 'SITE' named entity 'ENTOMOBIRNAVIRUSES' named entity 'RELATIONSHIP' named entity 'EUROPE' named entity 'INFECTIOUS PANCREATIC NECROSIS VIRUS' named entity 'USA' named entity 'FAMILY' named entity 'DISTINCT FROM' named entity 'POSITION' named entity 'CHARACTERIZATION' named entity 'BIRNAVIRUS' named entity 'COMPARED' named entity 'ROCKFISH' named entity 'ANALYZING' named entity 'BIRNAVIRUS' named entity 'RELATED' named entity 'CLUSTERED' named entity 'VP1 PROTEIN' named entity 'DETERMINED' named entity 'PREDICTED' named entity 'FOUND' named entity 'GENUS' named entity 'MABV' named entity 'CONTAINS' named entity 'GENETIC' named entity 'NUCLEOTIDE SEQUENCE' named entity 'AMINO ACID' named entity 'KOREA' named entity 'GC1' named entity 'ISOLATED' named entity 'LEU-LYS' named entity 'PROTEIN ' named entity 'VP1' named entity 'TYPICAL' named entity 'ASN-' named entity 'OBSERVED' named entity 'AQUATIC' named entity 'MOTIFS' named entity 'BASED' named entity 'CDNA' named entity 'OPEN READING FRAME' named entity 'GLY-ASP'

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