About: Genetic diversity of swine influenza viruses isolated from pigs during 2000 to 2005 in Thailand

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

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type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Genetic diversity of swine influenza viruses isolated from pigs during 2000 to 2005 in Thailand
Creator	Parchariyanon, Sujira Saito, Takehiko Damrongwatanapokin, Sudarat Ruttanapumma, Ruttapong Takemae, Nobuhiro Uchida, Yuko Watanabe, Chiaki Yamaguchi, Shigeo
source	PMC
abstract	Background Recent studies have revealed the existence of genetic diversity in swine influenza viruses (SIVs) in the world. In Thailand, there has been a little information on the molecular characteristics of the SIVs since the first isolation of viruses of H1N1 and H3N2 subtypes in the late 1970s. Our previous study demonstrated that Thai H1N1 SIVs possessed the classical swine H1 and avian‐like swine N1 genes (Takemae et al., Proceedings of the Options for the Control of Influenza VI.2007;350–353). Objectives In the present study, we genetically characterized 12 SIVs including those of H1N1, H1N2 and H3N2 subtypes isolated between 2000 and 2005. Methods We determined the entire nucleotide sequences of the eight gene segments of those isolates. Results Phylogenetic analysis revealed the existence of nine distinct genotypes amongst the Thai SIVs. These genotypes arose from multiple introductions of classical swine, avian‐like swine and human viruses. The existence of two distinct sublineages within classical swine H1 and NS, avian‐like swine PA and M and human H3 and N2 genes of the Thai SIVs suggested that introduction of viruses of classical swine, avian‐like swine and human origins occurred twice respectively into the Thai pig population. The predominance of avian‐like swine genes amongst the Thai SIVs was evident. In particular, three polymerase (PB1, PB2 and PA) and matrix genes of avian‐like swine origin were retained in all the Thai SIVs examined. Conclusions These observations may suggest that genes of avian‐like swine lineages have some advantages to be maintained in pigs as seen in the SIVs established through multiple introductions in other regions.
has issue date	2008-11-24(xsd:dateTime)
bibo:doi	10.1111/j.1750-2659.2008.00062.x
bibo:pmid	19453423
has license	no-cc
sha1sum (hex)	e59218b42f783a547778cbf247cce2552f9a163a
schema:url	https://doi.org/10.1111/j.1750-2659.2008.00062.x
resource representing a document's title	Genetic diversity of swine influenza viruses isolated from pigs during 2000 to 2005 in Thailand
has PubMed Central identifier	PMC4941901
has PubMed identifier	19453423
schema:publication	Influenza Other Respir Viruses
resource representing a document's body	covid:e59218b42f783a547778cbf247cce2552f9a163a#body_text
is schema:about of	named entity 'INFLUENZA VIRUSES' named entity 'Thailand' named entity 'THAILAND' named entity 'ISOLATED' named entity '2000' named entity 'SWINE INFLUENZA' named entity 'GENETIC DIVERSITY' named entity 'PIGS' named entity 'Genetic diversity' named entity 'viruses' named entity 'surface antigens' named entity 'SIVs' named entity 'Low appetite' named entity 'H1N2' named entity 'phylogenetic study' named entity 'Cla' named entity 'confidence limit' named entity 'viruses' named entity 'Thailand' named entity 'gene' named entity 'clinical signs' named entity 'H3N2' named entity 'genotypes' named entity 'gene' named entity 'Japan' named entity 'H1N2' named entity 'Viruses' named entity 'viruses' named entity 'Asian' named entity 'Big Dye terminator' named entity 'confidence limit' named entity 'SIV' named entity 'pig' named entity 'Swine influenza' named entity 'North America' named entity 'SIV' named entity 'reassortant' named entity 'SIVs' named entity 'phylogenetic analysis' named entity 'SIVs' named entity 'gene' named entity 'viruses' named entity 'pig meat' named entity 'nucleoprotein' named entity 'viruses' named entity 'Cla' named entity 'swine influenza' named entity 'H1N1' named entity 'pig' named entity 'H1N1' named entity 'viruses' named entity 'H1N1' named entity 'H1N2' named entity 'Europe' named entity 'pig farms' named entity 'primers' named entity 'hypothetical common ancestor' named entity 'SIVs' named entity 'virus' named entity 'H1N2' named entity 'confidence limit' named entity 'Italian' named entity 'nucleotide sequences' named entity 'Cla' named entity 'respiratory tract' named entity 'pig' named entity 'diarrhoea' named entity 'gene' named entity 'virus' named entity 'Thailand' named entity 'North American' named entity 'genotypes' named entity 'H3N2' named entity 'hypothetical common ancestor'

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