About: Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses

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About: Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses
Creator	Triki, Henda Ferchichi, Imen Haddad-Boubaker, Sondes Kharrat, Maher Lachiri, Zied Messaoudi, Imen Ouesleti, Afef Touati, Rabeb
Source	Elsevier; Medline; PMC
abstract	Abstract Coronaviruses are responsible on respiratory diseases in animal and human. The combination of numerical encoding techniques and digital signal processing methods are becoming increasingly important in handling large genomic data. In this paper, we propose to analyze the SARS-CoV-2 genomic signature using the combination of different nucleotide representations and signal processing tools in the aim to identify its genetic origin. The sequence of SARS-CoV-2 was compared with 21 relevant sequences including bat, yak and pangolin coronavirus sequences. In addition, we developed a new algorithm to locate the nucleotide modifications. The results show that the Bat and Pangolin coronaviruses were the most related to SARS-CoV-2 with 96% and 86% of identity all along the genome. Within the S gene sequence, the Pangolin sequence presents local highest nucleotide identity. Those findings suggest genesis of SARS-Cov-2 through evolution from bat and pangolin strains. This study offers new ways to automatically characterize viruses.
has issue date	2020-07-06(xsd:dateTime)
bibo:doi	10.1016/j.ygeno.2020.07.003
bibo:pmid	32645523
has license	els-covid
sha1sum (hex)	e6ad7e975c1db0ded4d6e6409243ab8001b9adc0
schema:url	https://doi.org/10.1016/j.ygeno.2020.07.003
resource representing a document's title	Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses
has PubMed Central identifier	PMC7336935
has PubMed identifier	32645523
schema:publication	Genomics
resource representing a document's body	covid:e6ad7e975c1db0ded4d6e6409243ab8001b9adc0#body_text
is schema:about of	named entity 'paper' named entity 'gene' named entity 'Within' named entity 'Pangolin' named entity 'Bat' named entity 'HIGHEST' named entity 'COMPARED' named entity 'HANDLING' named entity 'GENETIC' named entity 'GENOMIC' named entity 'IMPORTANT' named entity 'HUMAN' named entity 'SARS-COV-2' named entity 'CORONAVIRUS' named entity 'RESPONSIBLE' named entity 'METHODS' named entity 'GENE SEQUENCE' named entity 'BAT' named entity 'ADDITION' named entity 'genomic' named entity 'Pangolin' named entity 'addition' named entity 'sequences' named entity 'genome' named entity 'COVID-19 coronavirus' named entity 'Journal' named entity 'nucleotide' named entity 'coronavirus' named entity 'algorithm' named entity 'gene' named entity 'genome' named entity 'nucleotide' named entity 'SARS-CoV-2' named entity 'signal processing' named entity 'recombination' named entity 'coronaviruses' named entity 'coronaviruses' named entity 'sequence' named entity 'genome' named entity 'Coronaviruses' named entity 'flowchart' named entity 'viruses' named entity 'base pair' named entity 'MERS-CoV' named entity 'Wuhan COVID-19' named entity 'coronaviruses' named entity 'recombination' named entity 'nucleotide sequence' named entity 'Morlet wavelet' named entity 'coronavirus' named entity 'Bat' named entity 'pangolin' named entity 'Clustal' named entity 'correlation' named entity 'Wavelet Transform' named entity 'Wuhan' named entity 'COVID-19 virus' named entity 'biologist' named entity 'CGR' named entity 'biological domain' named entity 'viruses' named entity 'oligomer' named entity 'betacoronavirus' named entity 'nucleotides' named entity 'Neighbor joining' named entity 'homology' named entity 'gene' named entity 'bat' named entity 'SARS-CoV-2' named entity 'nucleotides' named entity 'HKU' named entity 'SARS-CoV-2' named entity 'recombination' named entity 'severe acute respiratory syndrome coronavirus'

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