About: Genome Sequencing and Analysis of Catopsilia pomona nucleopolyhedrovirus: A Distinct Species in Group I Alphabaculovirus

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About: Genome Sequencing and Analysis of Catopsilia pomona nucleopolyhedrovirus: A Distinct Species in Group I Alphabaculovirus Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genome Sequencing and Analysis of Catopsilia pomona nucleopolyhedrovirus: A Distinct Species in Group I Alphabaculovirus
Creator	Wang, Jun Zhang, Lei Arif, Basil Deng, Fei Hou, Dianhai Hu, Zhihong Kou, Zheng Wang, Hualin Wang, Manli Zhu, Zheng
Source	PMC
abstract	The genome sequence of Catopsilia pomona nucleopolyhedrovirus (CapoNPV) was determined by the Roche 454 sequencing system. The genome consisted of 128,058 bp and had an overall G+C content of 40%. There were 130 hypothetical open reading frames (ORFs) potentially encoding proteins of more than 50 amino acids and covering 92% of the genome. Among all the hypothetical ORFs, 37 baculovirus core genes, 23 lepidopteran baculovirus conserved genes and 10 genes conserved in Group I alphabaculoviruses were identified. In addition, the genome included regions of 8 typical baculoviral homologous repeat sequences (hrs). Phylogenic analysis showed that CapoNPV was in a distinct branch of clade “a” in Group I alphabaculoviruses. Gene parity plot analysis and overall similarity of ORFs indicated that CapoNPV is more closely related to the Group I alphabaculoviruses than to other baculoviruses. Interesting, CapoNPV lacks the genes encoding the fibroblast growth factor (fgf) and ac30, which are conserved in most lepidopteran and Group I baculoviruses, respectively. Sequence analysis of the F-like protein of CapoNPV showed that some amino acids were inserted into the fusion peptide region and the pre-transmembrane region of the protein. All these unique features imply that CapoNPV represents a member of a new baculovirus species.
has issue date	2016-05-11(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0155134
bibo:pmid	27166956
has license	cc-by
sha1sum (hex)	e6e00bfca850f42e1b2baa9ce190d37554f4a42e
schema:url	https://doi.org/10.1371/journal.pone.0155134
resource representing a document's title	Genome Sequencing and Analysis of Catopsilia pomona nucleopolyhedrovirus: A Distinct Species in Group I Alphabaculovirus
has PubMed Central identifier	PMC4864199
has PubMed identifier	27166956
schema:publication	PLoS One
resource representing a document's body	covid:e6e00bfca850f42e1b2baa9ce190d37554f4a42e#body_text
is schema:about of	named entity 'GENOME SEQUENCING' named entity 'protein' named entity 'covering' named entity 'There' named entity 'addition' named entity 'member' named entity 'Species' named entity 'ALPHABACULOVIRUS' named entity 'FEATURES' named entity 'GROUP I' named entity 'BACULOVIRUS' named entity 'IDENTIFIED' named entity 'HOMOLOGOUS' named entity 'HRS' named entity 'OVERALL' named entity 'TRANSMEMBRANE REGION' named entity 'LACKS' named entity 'MORE THAN 50' named entity 'HYPOTHETICAL' named entity 'GENOME' named entity 'INCLUDED' named entity 'PARITY' named entity 'REGION' named entity '130' named entity 'LIKE' named entity 'CORE' named entity 'GENES' named entity 'CONSERVED' named entity 'GENOME SEQUENCE' named entity 'ORFS' named entity 'GENE' named entity '22A' named entity 'BRANCH OF' named entity 'REPEAT SEQUENCES' named entity 'FUSION PEPTIDE' named entity 'PROTEIN' named entity 'UNIQUE' named entity 'DISTINCT' named entity 'NEW' named entity 'DISTINCT' named entity 'ADDITION' named entity 'THESE' named entity 'ANALYSIS' named entity 'COVERING' named entity 'GROUP I' named entity 'SPECIES' named entity 'CATOPSILIA POMONA NUCLEOPOLYHEDROVIRUS' named entity 'PROTEINS' named entity 'RELATED' named entity 'OPEN READING FRAMES' named entity 'DETERMINED BY' named entity 'INTERESTING' named entity 'SYSTEM' named entity 'FIG' named entity 'SEQUENCE ANALYSIS' named entity 'ALPHABACULOVIRUSES' named entity 'PROTEIN ' named entity 'PLOT' named entity 'MEMBER OF' named entity 'ENCODING' named entity 'SIMILARITY' named entity 'CLADE' named entity 'INDICATED' named entity '40%' named entity 'TYPICAL' named entity 'AMINO ACIDS' named entity 'CONTENT' named entity 'SPECIES' named entity 'ROCHE' named entity 'REGIONS' named entity 'PRE' named entity 'INSERTED INTO'

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