About: Virome heterogeneity and connectivity in waterfowl and shorebird communities

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Virome heterogeneity and connectivity in waterfowl and shorebird communities
Creator	Wille, Michelle Shi, Mang Aeron, • Holmes, • Hurt, C Klaassen, •
Source	Medline; PMC
abstract	Models of host-microbe dynamics typically assume a single-host population infected by a single pathogen. In reality, many hosts form multi-species aggregations and may be infected with an assemblage of pathogens. We used a meta-transcriptomic approach to characterize the viromes of nine avian species in the Anseriformes (ducks) and Charadriiformes (shorebirds). This revealed the presence of 27 viral species, of which 24 were novel, including double-stranded RNA viruses (Picobirnaviridae and Reoviridae), single-stranded RNA viruses (Astroviridae, Caliciviridae, Picornaviridae), a retro-transcribing DNA virus (Hepadnaviridae), and a single-stranded DNA virus (Parvoviridae). These viruses comprise multi-host generalist viruses and those that are host-specific, indicative of both virome connectivity (host sharing) and heterogeneity (host specificity). Virome connectivity was apparent in two well described multi-host virus species -avian coronavirus and influenza A virus- and a novel Rotavirus species that were shared among some Anseriform species, while virome heterogeneity was reflected in the absence of viruses shared between Anseriformes and Charadriiformes, as well as differences in viral abundance and alpha diversity among species. Overall, we demonstrate complex virome structures across host species that co-exist in multi-species aggregations.
has issue date	2019-06-25(xsd:dateTime)
bibo:doi	10.1038/s41396-019-0458-0
bibo:pmid	31239538
has license	cc-by
sha1sum (hex)	e8108cdb4654206b4d0e053ce95255aaf71f3303
schema:url	https://doi.org/10.1038/s41396-019-0458-0
resource representing a document's title	Virome heterogeneity and connectivity in waterfowl and shorebird communities
has PubMed Central identifier	PMC6775988
has PubMed identifier	31239538
schema:publication	ISME J
resource representing a document's body	covid:e8108cdb4654206b4d0e053ce95255aaf71f3303#body_text
is schema:about of	named entity 'abundance' named entity 'reality' named entity 'apparent' named entity 'viruses' named entity 'DNA virus' named entity 'Reoviridae' named entity 'virome' named entity 'pathogen' named entity 'host-specific' named entity 'infected' named entity 'ALPHA DIVERSITY' named entity 'MODELS' named entity 'MULTI' named entity 'MICROBE' named entity 'VIRAL' named entity 'OVERALL' named entity 'PATHOGEN' named entity 'GENERALIST' named entity 'HETEROGENEITY' named entity 'CONNECTIVITY' named entity 'ACROSS' named entity 'APPARENT' named entity 'CALICIVIRIDAE' named entity 'VIRUS' named entity 'SINGLE-STRANDED RNA' named entity 'STRUCTURES' named entity 'COMPRISE' named entity 'INFLUENZA A VIRUS' named entity 'SHARING' named entity 'APPROACH' named entity 'HOST' named entity 'SPECIFICITY' named entity 'REFLECTED' named entity 'FORM' named entity 'MAY BE' named entity 'PRESENCE OF' named entity 'SINGLE' named entity 'PICORNAVIRIDAE' named entity 'INCLUDING' named entity 'NOVEL' named entity 'COMMUNITIES' named entity 'SPECIFIC' named entity 'DYNAMICS' named entity 'HOST POPULATION' named entity 'RNA VIRUSES' named entity 'DNA VIRUS' named entity 'HOST SPECIES' named entity 'REALITY' named entity 'CONNECTIVITY' named entity 'HETEROGENEITY' named entity 'WATERFOWL' named entity 'THESE' named entity 'INFECTED' named entity 'AVIAN' named entity 'ROTAVIRUS' named entity 'TO CHARACTERIZE' named entity 'VIRUSES' named entity 'SHARED' named entity 'USED' named entity 'EXIST' named entity 'ABUNDANCE' named entity 'COMPLEX' named entity 'REVEALED' named entity 'REOVIRIDAE' named entity 'AVIAN CORONAVIRUS' named entity 'ABSENCE OF' named entity 'CHARADRIIFORMES' named entity 'META' named entity 'SPECIES' named entity 'DESCRIBED' named entity 'DOUBLE-STRANDED RNA' named entity 'PATHOGENS' named entity 'ANSERIFORMES' covid:arg/e8108cdb4654206b4d0e053ce95255aaf71f3303 named entity 'Astroviridae' named entity 'alpha diversity'

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