About: Ancestry inference of 96 population samples using microhaplotypes

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Ancestry inference of 96 population samples using microhaplotypes Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Ancestry inference of 96 population samples using microhaplotypes
Creator	Grigorenko, Elena Gurwitz, David Brissenden, Jane Bulbul, Ozlem Chang, Joseph Evsanaa, Baigalmaa Gurkan, Cemal Kidd, Kenneth Lagace, Robert Pakstis, Andrew Paschou, Peristera Roscoe, Janet Soundararajan, Usha Speed, William Togtokh, Ariunaa Wootton, Sharon
Source	PMC
abstract	Microhaplotypes have become a new type of forensic marker with a great ability to identify and deconvolute mixtures because massively parallel sequencing (MPS) allows the alleles (haplotypes) of the multi-SNP loci to be determined directly for an individual. As originally defined, a microhaplotype locus is a short segment of DNA with two or more SNPs defining three or more haplotypes. The length is short enough, less than about 300 bp, that the read length of current MPS technology can produce a phase-known sequence of each chromosome of an individual. As part of the discovery phase of our studies, data on 130 microhaplotype loci with estimates of haplotype frequency data on 83 populations have been published. To provide a better picture of global allele frequency variation, we have now tested 13 more populations for 65 of the microhaplotype loci from among those with higher levels of inter-population gene frequency variation, including 8 loci not previously published. These loci provide clear distinctions among 6 biogeographic regions and provide some information distinguishing up to 10 clusters of populations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00414-017-1748-6) contains supplementary material, which is available to authorized users.
has issue date	2017-12-16(xsd:dateTime)
bibo:doi	10.1007/s00414-017-1748-6
bibo:pmid	29248957
has license	no-cc
sha1sum (hex)	ec9182a795d5345ebf6b5c6196d229b0acf4d007
schema:url	https://doi.org/10.1007/s00414-017-1748-6
resource representing a document's title	Ancestry inference of 96 population samples using microhaplotypes
has PubMed Central identifier	PMC5920014
has PubMed identifier	29248957
schema:publication	Int J Legal Med
resource representing a document's body	covid:ec9182a795d5345ebf6b5c6196d229b0acf4d007#body_text
is schema:about of	named entity 'discovery phase' named entity 'frequency' named entity 'clusters' named entity 'STUDIES' named entity 'LENGTH' named entity 'DATA' named entity 'FREQUENCY' named entity 'MULTI' named entity 'data' named entity 'variation' named entity 'short' named entity 'loci' named entity 'massively parallel sequencing' named entity 'chromosome' named entity 'loci' named entity 'SNP' named entity 'haplotypes' named entity 'alleles' named entity 'loci' named entity 'population samples' named entity 'inference' named entity 'forensic' named entity 'Southwest Asia' named entity 'stutter' named entity 'phenotypes' named entity 'Americas' named entity 'multiple loci' named entity 'deconvolution' named entity 'European populations' named entity 'loci' named entity 'SNPs' named entity 'Native Americans' named entity 'loci' named entity 'loci' named entity '1000 Genomes' named entity 'West Africa' named entity 'loci' named entity 'East Asians' named entity 'loci' named entity 'Sub-Saharan African' named entity 'sampling' named entity 'SNP' named entity 'loci' named entity 'Africa' named entity 'loci' named entity 'haplotype' named entity 'locus' named entity 'haplotypes' named entity 'chromosomes' named entity 'deconvolution' named entity 'farthest North' named entity 'inference' named entity 'loci' named entity 'European populations' named entity 'loci' named entity 'Sanger' named entity 'multiple alleles' named entity 'SNPs' named entity 'loci' named entity 'MPS' named entity 'loci' named entity 'MPS' named entity 'chromosome 5' named entity 'SNPs' named entity 'deconvolution' named entity 'MPS'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software