About: Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan

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About: Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan
Creator	Chao, Day-Yu Chiou, Ming-Tang Lin, Chao-Nan Cheng, I-Ju Sung, Ming-Hua Thanh, Quang-Hien Lanid, Yu-Ching
Source	PMC
abstract	The porcine epidemic diarrhea virus (PEDV) that emerged and spread throughout Taiwan in 2014 triggered significant concern in the country’s swine industry. Acknowledging the absence of a thorough investigation at the geographic level, we used 2014 outbreak sequence information from the Taiwan government’s open access databases plus GenBank records to analyze PEDV dissemination among Taiwanese pig farms. Genetic sequences, locations, and dates of identified PEDV-positive cases were used to assess spatial, temporal, clustering, GIS, and phylogeographic factors affecting PEDV dissemination. Our conclusion is that S gene sequences from 2014 PEDV-positive clinical samples collected in Taiwan were part of the same Genogroup 2 identified in the US in 2013. According to phylogenetic and phylogeographic data, viral strains collected in different areas were generally independent of each other, with certain clusters identified across different communities. Data from GIS and multiple potential infection factors were used to pinpoint cluster dissemination in areas with large numbers of swine farms in southern Taiwan. The data indicate that the 2014 Taiwan PEDV epidemic resulted from the spread of multiple strains, with strong correlations identified with pig farm numbers and sizes (measured as animal concentrations), feed mill numbers, and the number of slaughterhouses in a specifically defined geographic area.
has issue date	2019-03-06(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0213153
bibo:pmid	30840679
has license	cc-by
sha1sum (hex)	f226ecb8f7484ca7943245de562c6f2f08be80a4
schema:url	https://doi.org/10.1371/journal.pone.0213153
resource representing a document's title	Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan
has PubMed Central identifier	PMC6402684
has PubMed identifier	30840679
schema:publication	PLoS One
resource representing a document's body	covid:f226ecb8f7484ca7943245de562c6f2f08be80a4#body_text
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