About: Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

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About: Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
Creator	Lund, Ole Sicheritz-Pontén, Thomas Bergmark, Lasse Carøe, Christian Hasman, Henrik Rasmussen, Simon Aarestrup, Frank Schultz, Anna Baelum, Jacob Petersen, Thomas Svendsen, Christina
Source	PMC
abstract	Human populations worldwide are increasingly confronted with infectious diseases and antimicrobial resistance spreading faster and appearing more frequently. Knowledge regarding their occurrence and worldwide transmission is important to control outbreaks and prevent epidemics. Here, we performed shotgun sequencing of toilet waste from 18 international airplanes arriving in Copenhagen, Denmark, from nine cities in three world regions. An average of 18.6 Gb (14.8 to 25.7 Gb) of raw Illumina paired end sequence data was generated, cleaned, trimmed and mapped against reference sequence databases for bacteria and antimicrobial resistance genes. An average of 106,839 (0.06%) reads were assigned to resistance genes with genes encoding resistance to tetracycline, macrolide and beta-lactam resistance genes as the most abundant in all samples. We found significantly higher abundance and diversity of genes encoding antimicrobial resistance, including critical important resistance (e.g. bla(CTX-M)) carried on airplanes from South Asia compared to North America. Presence of Salmonella enterica and norovirus were also detected in higher amounts from South Asia, whereas Clostridium difficile was most abundant in samples from North America. Our study provides a first step towards a potential novel strategy for global surveillance enabling simultaneous detection of multiple human health threatening genetic elements, infectious agents and resistance genes.
has issue date	2015-07-10(xsd:dateTime)
bibo:doi	10.1038/srep11444
bibo:pmid	26161690
has license	cc-by
sha1sum (hex)	f4ac2b1e9b9523671d7c38c27a19f1eec2e15d75
schema:url	https://doi.org/10.1038/srep11444
resource representing a document's title	Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
has PubMed Central identifier	PMC4498435
has PubMed identifier	26161690
schema:publication	Sci Rep
resource representing a document's body	covid:f4ac2b1e9b9523671d7c38c27a19f1eec2e15d75#body_text
is schema:about of	named entity 'WASTE' named entity 'SURVEILLANCE OF INFECTIOUS DISEASES' named entity 'TOILET' named entity 'LONG DISTANCE' named entity 'STEP' named entity 'GENOMIC' named entity 'ANALYSIS' named entity 'ANTIMICROBIAL RESISTANCE' named entity 'META' named entity 'global surveillance' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'gene sequences' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Tetracycline' named entity 'Trimethoprim' named entity 'Tetracycline' named entity 'Tetracycline'

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