About: Protein sequence analysis based on hydropathy profile of amino acids

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Protein sequence analysis based on hydropathy profile of amino acids
Creator	Yu, Ying Song, John Guo, Man-Cai Liang, Li-Ping Xie, Xiao-Li Yuan, Zhi-Fa Zheng, Li-Fei
Source	PMC
abstract	Biology sequence comparison is a fundamental task in computational biology. According to the hydropathy profile of amino acids, a protein sequence is taken as a string with three letters. Three curves of the new protein sequence were defined to describe the protein sequence. A new method to analyze the similarity/dissimilarity of protein sequence was proposed based on the conditional probability of the protein sequence. Finally, the protein sequences of ND6 (NADH dehydrogenase subunit 6) protein of eight species were taken as an example to illustrate the new approach. The results demonstrated that the method is convenient and efficient.
has issue date	2012-01-27(xsd:dateTime)
bibo:doi	10.1631/jzus.b1100052
bibo:pmid	22302429
has license	green-oa
sha1sum (hex)	fb49968febfe6d5e4103cf3d834bb22ea994a341
schema:url	https://doi.org/10.1631/jzus.b1100052
resource representing a document's title	Protein sequence analysis based on hydropathy profile of amino acids
has PubMed Central identifier	PMC3274743
has PubMed identifier	22302429
schema:publication	Journal of Zhejiang University SCIENCE B
resource representing a document's body	covid:fb49968febfe6d5e4103cf3d834bb22ea994a341#body_text
is schema:about of	named entity 'letters' named entity 'amino acids' named entity 'BASED' named entity 'DEMONSTRATED' named entity 'SUBUNIT' named entity 'EXAMPLE' named entity 'PROFILE' named entity 'BASED' covid:arg/fb49968febfe6d5e4103cf3d834bb22ea994a341 named entity 'PROBABILITY OF' named entity 'NEW' named entity 'TASK' named entity 'IS A' named entity 'CONDITIONAL PROBABILITY' named entity 'PROTEIN ' named entity 'PROPOSED' named entity 'RESULTS' named entity 'LETTERS' named entity 'PROTEIN SEQUENCES' named entity 'AMINO ACIDS' named entity 'APPROACH' named entity 'CONVENIENT' named entity 'METHOD' named entity 'PROTEIN SEQUENCE' named entity 'BIOLOGY' named entity 'HYDROPATHY' named entity 'COMPUTATIONAL BIOLOGY' named entity 'ND6' named entity 'PROTEIN SEQUENCE ANALYSIS' named entity 'PROFILE' named entity 'HYDROPATHY' named entity 'DEHYDROGENASE' named entity 'SIMILARITY' named entity 'AMINO ACIDS' named entity 'STRING' named entity 'SEQUENCE COMPARISON' named entity 'TAKEN' named entity 'DEFINED' named entity 'TO DESCRIBE' named entity 'ACCORDING' named entity 'SPECIES' named entity 'A PROTEIN' named entity 'EFFICIENT' named entity 'protein' named entity 'similarity' named entity 'sequence' named entity 'curves' named entity 'sequence' named entity 'Three' named entity 'defined' named entity 'subunit' named entity 'protein' named entity 'protein' named entity 'protein sequence' named entity 'protein sequence' named entity 'hydropathy' named entity 'illustrate' named entity 'protein' named entity 'DNA sequence' named entity 'amino acids' named entity 'ith' named entity 'conditional probability' named entity 'chimpanzee' named entity 'conditional probability' named entity 'DNA sequence' named entity 'protein sequences' named entity 'primary sequence' named entity 'protein' named entity 'Vinga' named entity 'amino acids' named entity 'amino acid sequence' named entity 'hydropathy' named entity 'protein sequence' named entity 'conditional probabilities' named entity 'protein sequence'

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