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n2:operation_0479

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owl:Class

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Backbone modelling

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Scaffold selection, scaffold search, epitope grafting and design optimization are stages of backbone modelling done during rational vaccine design. Methods might require a preliminary C(alpha) trace.

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n2:operation_0477

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wdrs:describedby

n5:data_3869 n5:topic_2846 n9:data_0956 n5:topic_3053 n5:format_1915 n9:data_0972 n9:operation_0292 n9:data_0896 n5:operation_0292 n9:operation_2441 n5:operation_0497 n9:operation_3431 n9:data_0945 n9:data_0872 n9:data_1285 n9:data_2865 n9:format_3607 n9:operation_0004 n9:operation_3429 n5:operation_2441 n5:format_3462 n5:operation_0398 n9:topic_3299 n5:format_3993 n5:topic_3307 n5:operation_3438 n9:data_2977 n5:data_2157 n9:topic_0003 n5:data_0950 n9:topic_3489 n9:format_1208 n9:is_function_of n5:operation_0306 n5:format_3007 n5:format_2332 n5:data_1354 n9:topic_0114 n9:operation_0308 n9:operation_0238 n9:operation_2575 n9:data_2972 n9:operation_3631 n9:topic_2818 n9:data_1426 n5:topic_3123 n9:data_3028 n9:data_3724 n5:topic_0217 n5:topic_3070 n5:operation_2409 n5:topic_2230 n5:topic_2258 n5:topic_0624 n5:format_3988 n9:data_0971 n9:topic_3077 n9:topic_3676 n9:data_0970 n9:data_2082 n9:data_1274 n9:format_3508 n9:data_2854 n9:data_1355 n9:format_3749 n9:data_3718 n9:topic_0089 n9:topic_3344 n9:data_1691 n9:data_2190 n9:data_3479 n9:data_3495 n5:format_3547 n5:is_topic_of n5:operation_3633 n5:format_3014 n5:data_2100 n5:operation_2480 n9:has_topic n9:topic_0625 n9:operation_0291 n5:operation_2424 n5:topic_3673 n5:data_2192 n5:operation_0308 n5:data_1717 n9:operation_0298 n9:format_1209 n5:data_3719 n5:format_3911 n5:topic_0083 n5:data_1266 n9:operation_2502 n5:topic_0003 n9:operation_3545 n9:format_2097 n5:topic_3048 n9:data_2600 n9:is_topic_of n9:topic_0081 n9:operation_2439 n5:format_3006 n9:data_3035 n9:data_2927 n5:operation_2429 n5:format_2548 n5:topic_0605 n5:data_2972 n9:operation_3658 n5:topic_2399 n5:format_1218 n9:operation_3900 n5:format_1632 n5:operation_3658 n9:operation_0314 n9:operation_2480 n9:topic_0085 n5:data_3108 n5:operation_3200 n5:topic_0153 n9:data_0968 n9:format_3602 n9:has_function n5:data_3495 n5:operation_3465 n5:data_1285 n5:has_topic n9:data_1255 n9:data_2092 n9:topic_0083 n5:data_1916 n9:created_in n9:format_1207 n5:operation_2499 n9:data_0867 n9:operation_2426 n5:operation_2439 n5:data_2977 n5:data_3028 n5:operation_3259 n9:topic_0121 n9:topic_3050 n9:data_2044 n9:operation_3891 n9:data_3869 n5:data_1047 n5:topic_2815 n5:topic_0922 n9:topic_2399 n9:format_3014 n9:data_2048 n9:data_0581 n9:data_2180 n9:data_3483 n9:operation_0297 n9:format_1915 n9:operation_2421 n9:data_0887 n9:data_1017 n5:topic_2640 n9:data_0007 n5:data_2092 n9:data_1916 n5:data_3716 n9:topic_3407 n9:topic_3423 n9:data_3861 n9:format_3626 n9:topic_3384 n9:operation_2995 n5:topic_3322 n9:data_3108 n5:topic_2276 n5:topic_3042 n5:topic_1317 n9:operation_3200 n9:topic_2533 n9:operation_3840 n5:data_1677 n9:data_0006 n5:topic_0199 n9:data_2162 n5:operation_3927 n9:format_2331 n5:data_3721 n9:data_0897 n9:data_1354 n9:data_2012 n9:data_1365 n9:data_0842 n9:documentation n9:data_1261 n9:data_0920 n9:data_3275 n9:data_2084 n5:data_1268 n9:topic_0154 n5:topic_3303 n5:topic_3573 n5:format_2331 n5:topic_3047 n5:data_1868 n9:topic_3372 n5:topic_0697 n9:data_2100 n9:topic_0594 n9:topic_3346 n9:format_3462 n5:topic_0783 n9:data_2955 n9:topic_2269 n5:data_2156 n9:topic_3369 n5:data_1880 n9:topic_3474 n9:operation_2485 n9:operation_2930 n9:data_3036 n5:has_function n9:data_2984 n9:data_3558 n9:data_2531 n9:data_2530 n5:data_0883 n9:data_1906 n5:data_2178 n9:data_3914 n5:format_1212 n9:data_0889 n9:data_1877 n9:data_2081 n9:topic_3042 n9:topic_0173 n5:data_1365 n5:topic_2811 n5:data_1693 n9:operation_0398 n5:topic_0135 n5:operation_3631 n5:topic_3346 n9:data_2156 n9:operation_3927 n5:topic_0594 n5:format_3602 n5:data_1238

obo:hasExactSynonym

Protein modelling (backbone)

obo:inSubset

n15:edam n15:operations n2:bio n2:operations

obo:hasNarrowSynonym

Epitope grafting Scaffold search Design optimization Scaffold selection

n2:created_in

beta12orEarlier

obo:hasDefinition

Model protein backbone conformation.

Subject Item

_:vb666712202

rdf:type

owl:Axiom

rdfs:comment

Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:bearer_of' is narrower in the sense that it only relates ontological categories (concepts) that are an 'independent_continuant' (snap:IndependentContinuant) with ontological categories that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant), and broader in the sense that it relates with any borne objects not just functions of the subject.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:has_function

owl:annotatedTarget

OBO_REL:bearer_of

Subject Item

_:vb666712203

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:has_function

owl:annotatedTarget

true

Subject Item

_:vb666712204

rdf:type

owl:Axiom

rdfs:comment

'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:has_input

owl:annotatedTarget

OBO_REL:has_participant

Subject Item

_:vb666712205

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:has_input

owl:annotatedTarget

true

Subject Item

_:vb666712206

rdf:type

owl:Axiom

rdfs:comment

'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just outputs or output arguments of the subject. It is also not clear whether an output (result) actually participates in the process that generates it.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:has_output

owl:annotatedTarget

OBO_REL:has_participant

Subject Item

_:vb666712207

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:has_output

owl:annotatedTarget

true

Subject Item

_:vb666712208

rdf:type

owl:Class

owl:unionOf

_:vb666712210

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712209

rdf:first

n2:operation_0004

rdf:rest

rdf:nil

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712210

rdf:first

n2:data_0006

rdf:rest

_:vb666712209

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712211

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:has_topic

owl:annotatedTarget

true

Subject Item

_:vb666712212

rdf:type

owl:Axiom

rdfs:comment

Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:is_format_of

owl:annotatedTarget

OBO_REL:quality_of

Subject Item

_:vb666712213

rdf:type

owl:Axiom

rdfs:comment

Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasNarrowSynonym

owl:annotatedSource

n2:is_function_of

owl:annotatedTarget

OBO_REL:function_of

Subject Item

_:vb666712214

rdf:type

owl:Axiom

rdfs:comment

Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:is_function_of

owl:annotatedTarget

OBO_REL:inheres_in

Subject Item

_:vb666712215

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:is_function_of

owl:annotatedTarget

true

Subject Item

_:vb666712216

rdf:type

owl:Axiom

rdfs:comment

'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just inputs or input arguments.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:is_input_of

owl:annotatedTarget

OBO_REL:participates_in

Subject Item

_:vb666712217

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:is_input_of

owl:annotatedTarget

true

Subject Item

_:vb666712218

rdf:type

owl:Axiom

rdfs:comment

'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:is_output_of

owl:annotatedTarget

OBO_REL:participates_in

Subject Item

_:vb666712219

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:is_output_of

owl:annotatedTarget

true

Subject Item

_:vb666712220

rdf:type

owl:Class

owl:unionOf

_:vb666712222

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712221

rdf:first

n2:operation_0004

rdf:rest

rdf:nil

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712222

rdf:first

n2:data_0006

rdf:rest

_:vb666712221

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712223

rdf:type

owl:Axiom

rdfs:comment

Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasRelatedSynonym

owl:annotatedSource

n2:is_topic_of

owl:annotatedTarget

OBO_REL:quality_of

Subject Item

_:vb666712224

rdf:type

owl:Axiom

rdfs:comment

In very unusual cases.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:isCyclic

owl:annotatedSource

n2:is_topic_of

owl:annotatedTarget

true

Subject Item

_:vb666712225

rdf:type

owl:Axiom

rdfs:comment

EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information).

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasExactSynonym

owl:annotatedSource

n2:data_0006

owl:annotatedTarget

Data record

Subject Item

_:vb666712226

rdf:type

owl:Axiom

rdfs:comment

EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasNarrowSynonym

owl:annotatedSource

n2:data_0006

owl:annotatedTarget

Data set

Subject Item

_:vb666712227

rdf:type

owl:Axiom

rdfs:comment

EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasNarrowSynonym

owl:annotatedSource

n2:data_0006

owl:annotatedTarget

Datum

Subject Item

_:vb666712228

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0089

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712229

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0006

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712230

rdf:type

owl:Axiom

rdfs:comment

Almost exact but limited to identifying resources.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasNarrowSynonym

owl:annotatedSource

n2:data_0842

owl:annotatedTarget

dce:identifier

Subject Item

_:vb666712231

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0160

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712232

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0080

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712233

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0084

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712234

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0097

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712235

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0081

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712236

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0081

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712237

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0081

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712238

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0128

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712239

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0623

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712240

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0203

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712241

rdf:type

owl:Axiom

rdfs:comment

Perhaps surprisingly, the definition of 'SO:assembly' is narrower than the 'SO:sequence_assembly'.

wdrs:describedby

n5:operation_0479 n9:operation_0479

owl:annotatedProperty

obo:hasNarrowSynonym

owl:annotatedSource

n2:data_0925

owl:annotatedTarget

SO:0001248

Subject Item

_:vb666712242

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_1317

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712243

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0121

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712244

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0121

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712245

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0121

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712246

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0121

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712247

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_3307

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712248

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_3489

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712249

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_3489

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712250

rdf:type

owl:Restriction

owl:onProperty

n2:has_topic

owl:someValuesFrom

n2:topic_0154

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712251

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0919

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712252

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0896

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712253

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_2851

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712254

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_2016

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712255

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_1467

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712256

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0916

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712257

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_1468

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712258

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0957

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712259

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0582

wdrs:describedby

n5:operation_0479 n9:operation_0479

Subject Item

_:vb666712260

rdf:type

owl:Restriction

owl:onProperty

n2:is_identifier_of

owl:someValuesFrom

n2:data_0847

wdrs:describedby

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