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Subject Item
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Exome sequencing
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Exome sequencing is considered a cheap alternative to whole genome sequencing.
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wdrs:describedby
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obo:hasExactSynonym
Targeted exome capture Exome capture Whole exome sequencing Exome analysis Exome WES
obo:inSubset
n10:topics n10:edam n5:bio n5:topics
n5:created_in
1.12
n5:documentation
n14:Exome_sequencing
obo:hasDefinition
Laboratory technique to sequence all the protein-coding regions in a genome, i.e., the exome.
obo:hasHumanReadableId
Exome_sequencing
Subject Item
_:vb666734738
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:bearer_of' is narrower in the sense that it only relates ontological categories (concepts) that are an 'independent_continuant' (snap:IndependentContinuant) with ontological categories that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant), and broader in the sense that it relates with any borne objects not just functions of the subject.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_function
owl:annotatedTarget
OBO_REL:bearer_of
Subject Item
_:vb666734739
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_function
owl:annotatedTarget
true
Subject Item
_:vb666734740
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_input
owl:annotatedTarget
OBO_REL:has_participant
Subject Item
_:vb666734741
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_input
owl:annotatedTarget
true
Subject Item
_:vb666734742
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just outputs or output arguments of the subject. It is also not clear whether an output (result) actually participates in the process that generates it.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_output
owl:annotatedTarget
OBO_REL:has_participant
Subject Item
_:vb666734743
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_output
owl:annotatedTarget
true
Subject Item
_:vb666734744
rdf:type
owl:Class
owl:unionOf
_:vb666734746
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734745
rdf:first
n5:operation_0004
rdf:rest
rdf:nil
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734746
rdf:first
n5:data_0006
rdf:rest
_:vb666734745
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734747
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_topic
owl:annotatedTarget
true
Subject Item
_:vb666734748
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_format_of
owl:annotatedTarget
OBO_REL:quality_of
Subject Item
_:vb666734749
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
OBO_REL:function_of
Subject Item
_:vb666734750
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
OBO_REL:inheres_in
Subject Item
_:vb666734751
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
true
Subject Item
_:vb666734752
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just inputs or input arguments.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_input_of
owl:annotatedTarget
OBO_REL:participates_in
Subject Item
_:vb666734753
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_input_of
owl:annotatedTarget
true
Subject Item
_:vb666734754
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_output_of
owl:annotatedTarget
OBO_REL:participates_in
Subject Item
_:vb666734755
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_output_of
owl:annotatedTarget
true
Subject Item
_:vb666734756
rdf:type
owl:Class
owl:unionOf
_:vb666734758
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734757
rdf:first
n5:operation_0004
rdf:rest
rdf:nil
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734758
rdf:first
n5:data_0006
rdf:rest
_:vb666734757
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734759
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_topic_of
owl:annotatedTarget
OBO_REL:quality_of
Subject Item
_:vb666734760
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_topic_of
owl:annotatedTarget
true
Subject Item
_:vb666734761
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasExactSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Data record
Subject Item
_:vb666734762
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Data set
Subject Item
_:vb666734763
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Datum
Subject Item
_:vb666734764
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0089
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734765
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0006
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734766
rdf:type
owl:Axiom
rdfs:comment
Almost exact but limited to identifying resources.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0842
owl:annotatedTarget
dce:identifier
Subject Item
_:vb666734767
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734768
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0080
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734769
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0084
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734770
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0097
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734771
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0081
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734772
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0081
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734773
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0081
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734774
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734775
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0623
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734776
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0203
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734777
rdf:type
owl:Axiom
rdfs:comment
Perhaps surprisingly, the definition of 'SO:assembly' is narrower than the 'SO:sequence_assembly'.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0925
owl:annotatedTarget
SO:0001248
Subject Item
_:vb666734778
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_1317
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734779
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734780
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734781
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734782
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734783
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3307
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734784
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3489
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734785
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3489
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734786
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0154
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734787
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0919
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734788
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0896
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734789
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2851
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734790
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2016
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734791
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1467
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734792
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0916
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734793
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1468
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734794
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734795
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0582
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734796
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0847
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734797
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2044
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734798
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0850
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734799
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0863
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734800
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0872
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734801
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0874
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734802
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0889
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734803
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0886
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734804
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1501
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734805
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0906
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734806
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0907
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734807
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1597
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734808
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1598
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734809
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2531
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734810
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_3805
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734811
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_3111
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734812
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0920
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734813
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2600
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734814
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0950
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734815
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0962
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734816
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0971
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734817
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2976
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734818
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2977
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734819
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1235
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734820
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1353
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734821
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1354
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734822
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1364
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734823
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0874
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734824
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734825
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734826
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734827
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734828
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734829
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734830
rdf:type
owl:Axiom
rdfs:comment
A protein entity has the MIRIAM data type 'UniProt', and an enzyme has the MIRIAM data type 'Enzyme Nomenclature'.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
n5:example
owl:annotatedSource
n5:data_1165
owl:annotatedTarget
UniProt|Enzyme Nomenclature
Subject Item
_:vb666734831
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0623
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734832
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734833
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0102
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734834
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734835
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734836
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0199
wdrs:describedby
n3:topic_3676
Subject Item
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owl:Restriction
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wdrs:describedby
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n5:topic_3065
wdrs:describedby
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n5:data_2530
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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wdrs:describedby
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_0102
wdrs:describedby
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0080
wdrs:describedby
n3:topic_3676
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Closely related, but focusing on labeling and human readability but not on identification.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasBroadSynonym
owl:annotatedSource
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owl:annotatedTarget
rdfs:label
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n5:is_identifier_of
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n5:is_identifier_of
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n5:is_identifier_of
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owl:onProperty
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Subject Item
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Subject Item
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owl:onProperty
n5:is_identifier_of
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Subject Item
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rdf:type
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Subject Item
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rdf:type
owl:Restriction
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wdrs:describedby
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Subject Item
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wdrs:describedby
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Subject Item
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rdf:type
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n5:has_topic
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_2229
wdrs:describedby
n3:topic_3676
Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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Subject Item
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rdf:type
owl:Restriction
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n5:has_topic
owl:someValuesFrom
n5:topic_0199
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_1622
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_1775
wdrs:describedby
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Subject Item
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rdf:type
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owl:onProperty
n5:has_topic
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Subject Item
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rdf:type
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owl:onProperty
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
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wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
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Subject Item
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rdf:type
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owl:onProperty
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Subject Item
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owl:Restriction
owl:onProperty
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wdrs:describedby
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Subject Item
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owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_0883
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_1714
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_3110
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_3111
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666734907
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owl:Axiom
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A defined data format has its implicit or explicit data model, and EDAM does not distinguish the two. Some data models however do not have any standard way of serialisation into an exchange format, and those are thus not considered formats in EDAM. (Remark: even broader - or closely related - term to 'Data model' would be an 'Information model'.)
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasBroadSynonym
owl:annotatedSource
n5:format_1915
owl:annotatedTarget
Data model
Subject Item
_:vb666734908
rdf:type
owl:Axiom
rdfs:comment
File format denotes only formats of a computer file, but the same formats apply also to data blobs or exchanged messages.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:format_1915
owl:annotatedTarget
File format
Subject Item
_:vb666734909
rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_0849
wdrs:describedby
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Subject Item
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owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_1255
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_0863
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_0872
wdrs:describedby
n3:topic_3676
Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_2600
wdrs:describedby
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Subject Item
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owl:onProperty
n5:is_format_of
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n5:data_0858
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_1501
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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wdrs:describedby
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Subject Item
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owl:onProperty
n5:is_format_of
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wdrs:describedby
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Subject Item
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owl:Restriction
owl:onProperty
n5:is_format_of
owl:someValuesFrom
n5:data_2024
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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n5:data_0962
wdrs:describedby
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rdf:type
owl:Restriction
owl:onProperty
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wdrs:describedby
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owl:onProperty
n5:is_format_of
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wdrs:describedby
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Subject Item
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wdrs:describedby
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Subject Item
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owl:onProperty
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owl:onProperty
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Subject Item
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wdrs:describedby
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owl:onProperty
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rdf:type
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owl:onProperty
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wdrs:describedby
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owl:onProperty
n5:is_format_of
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owl:onProperty
n5:is_format_of
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wdrs:describedby
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owl:onProperty
n5:is_format_of
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wdrs:describedby
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rdf:type
owl:Restriction
owl:onProperty
n5:is_format_of
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wdrs:describedby
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wdrs:describedby
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Subject Item
_:vb666735022
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Operation is a function that is computational. It typically has input(s) and output(s), which are always data.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasBroadSynonym
owl:annotatedSource
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Function
Subject Item
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Computational tool provides one or more operations.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
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owl:annotatedSource
n5:operation_0004
owl:annotatedTarget
Computational tool
Subject Item
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Process can have a function (as its quality/attribute), and can also perform an operation with inputs and outputs.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:operation_0004
owl:annotatedTarget
Process
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wdrs:describedby
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n5:data_2012
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735297
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_2012
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735298
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_2044
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735299
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3077
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735300
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_3505
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735301
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0123
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735302
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0166
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735303
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0006
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735304
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_3358
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735305
rdf:type
owl:Axiom
rdfs:comment
The has_input "Data" (data_0006) may cause visualisation or other problems although ontologically correct. But on the other hand it may be useful to distinguish from nullary operations without inputs.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
n5:comment_handle
owl:annotatedSource
n5:operation_3357
owl:annotatedTarget
n5:comment_handle
Subject Item
_:vb666735306
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3068
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735307
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3382
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735308
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2229
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735309
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2229
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735310
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_1317
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735311
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_1775
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735312
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3301
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735313
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735314
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0097
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735315
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0084
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735316
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3301
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735317
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_3753
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735318
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_1775
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735319
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3382
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735320
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735321
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735322
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735323
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735324
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735325
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735326
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735327
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2259
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735328
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0602
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735329
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735330
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_3671
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735331
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_3779
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735332
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3068
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735333
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735334
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735335
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_2162
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735336
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_1439
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735337
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0084
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735338
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_1461
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735339
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735340
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_0906
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735341
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735342
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_0906
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735343
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735344
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3301
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735345
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0622
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735346
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0622
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735347
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_2600
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735348
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_2600
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735349
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0602
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735350
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2259
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735351
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0602
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735352
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2259
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735353
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735354
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735355
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735356
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735357
rdf:type
owl:Restriction
owl:onProperty
n5:has_input
owl:someValuesFrom
n5:data_0943
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735358
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735359
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_1461
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735360
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735361
rdf:type
owl:Restriction
owl:onProperty
n5:has_output
owl:someValuesFrom
n5:data_1439
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735362
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0084
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735363
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0804
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735364
rdf:type
n9:DataAccess
wdrs:describedby
n3:topic_3676
n9:performedAt
2024-10-19T18:06:18.829197
n9:performedBy
n11:spongerInstance
n9:accessedService
n5:topic_3676
Subject Item
_:vb666735365
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:bearer_of' is narrower in the sense that it only relates ontological categories (concepts) that are an 'independent_continuant' (snap:IndependentContinuant) with ontological categories that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant), and broader in the sense that it relates with any borne objects not just functions of the subject.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_function
owl:annotatedTarget
OBO_REL:bearer_of
Subject Item
_:vb666735366
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_function
owl:annotatedTarget
true
Subject Item
_:vb666735367
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_input
owl:annotatedTarget
OBO_REL:has_participant
Subject Item
_:vb666735368
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_input
owl:annotatedTarget
true
Subject Item
_:vb666735369
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just outputs or output arguments of the subject. It is also not clear whether an output (result) actually participates in the process that generates it.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:has_output
owl:annotatedTarget
OBO_REL:has_participant
Subject Item
_:vb666735370
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_output
owl:annotatedTarget
true
Subject Item
_:vb666735371
rdf:type
owl:Class
owl:unionOf
_:vb666735373
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735372
rdf:first
n5:operation_0004
rdf:rest
rdf:nil
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735373
rdf:first
n5:data_0006
rdf:rest
_:vb666735372
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735374
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:has_topic
owl:annotatedTarget
true
Subject Item
_:vb666735375
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_format_of
owl:annotatedTarget
OBO_REL:quality_of
Subject Item
_:vb666735376
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
OBO_REL:function_of
Subject Item
_:vb666735377
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
OBO_REL:inheres_in
Subject Item
_:vb666735378
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_function_of
owl:annotatedTarget
true
Subject Item
_:vb666735379
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just inputs or input arguments.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_input_of
owl:annotatedTarget
OBO_REL:participates_in
Subject Item
_:vb666735380
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_input_of
owl:annotatedTarget
true
Subject Item
_:vb666735381
rdf:type
owl:Axiom
rdfs:comment
'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_output_of
owl:annotatedTarget
OBO_REL:participates_in
Subject Item
_:vb666735382
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_output_of
owl:annotatedTarget
true
Subject Item
_:vb666735383
rdf:type
owl:Class
owl:unionOf
_:vb666735385
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735384
rdf:first
n5:operation_0004
rdf:rest
rdf:nil
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735385
rdf:first
n5:data_0006
rdf:rest
_:vb666735384
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735386
rdf:type
owl:Axiom
rdfs:comment
Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
n5:is_topic_of
owl:annotatedTarget
OBO_REL:quality_of
Subject Item
_:vb666735387
rdf:type
owl:Axiom
rdfs:comment
In very unusual cases.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:isCyclic
owl:annotatedSource
n5:is_topic_of
owl:annotatedTarget
true
Subject Item
_:vb666735388
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasExactSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Data record
Subject Item
_:vb666735389
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Data set
Subject Item
_:vb666735390
rdf:type
owl:Axiom
rdfs:comment
EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0006
owl:annotatedTarget
Datum
Subject Item
_:vb666735391
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0089
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735392
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0006
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735393
rdf:type
owl:Axiom
rdfs:comment
Almost exact but limited to identifying resources.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0842
owl:annotatedTarget
dce:identifier
Subject Item
_:vb666735394
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735395
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_0080
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735396
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0084
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735397
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0097
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735398
rdf:type
owl:Restriction
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n5:has_topic
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n5:topic_0081
wdrs:describedby
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Subject Item
_:vb666735399
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0081
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735400
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0081
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735401
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0128
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735402
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0623
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735403
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0203
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735404
rdf:type
owl:Axiom
rdfs:comment
Perhaps surprisingly, the definition of 'SO:assembly' is narrower than the 'SO:sequence_assembly'.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasNarrowSynonym
owl:annotatedSource
n5:data_0925
owl:annotatedTarget
SO:0001248
Subject Item
_:vb666735405
rdf:type
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n5:topic_1317
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
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n5:has_topic
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Subject Item
_:vb666735408
rdf:type
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Subject Item
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rdf:type
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Subject Item
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Subject Item
_:vb666735411
rdf:type
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n5:has_topic
owl:someValuesFrom
n5:topic_3489
wdrs:describedby
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Subject Item
_:vb666735412
rdf:type
owl:Restriction
owl:onProperty
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wdrs:describedby
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Subject Item
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rdf:type
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Subject Item
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Subject Item
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n5:is_identifier_of
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_2851
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735417
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_2016
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
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n5:is_identifier_of
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n5:data_1467
wdrs:describedby
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Subject Item
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rdf:type
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n5:is_identifier_of
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n5:data_0916
wdrs:describedby
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Subject Item
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n5:is_identifier_of
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n5:data_1468
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Subject Item
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rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735422
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0582
wdrs:describedby
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Subject Item
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rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_0847
wdrs:describedby
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Subject Item
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Subject Item
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Subject Item
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Subject Item
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rdf:type
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n5:is_identifier_of
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n5:data_0872
wdrs:describedby
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Subject Item
_:vb666735428
rdf:type
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n5:is_identifier_of
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n5:data_0874
wdrs:describedby
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Subject Item
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rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_0889
wdrs:describedby
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Subject Item
_:vb666735430
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owl:onProperty
n5:is_identifier_of
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n5:data_0886
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Subject Item
_:vb666735431
rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_1501
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Subject Item
_:vb666735432
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0906
wdrs:describedby
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Subject Item
_:vb666735433
rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_0907
wdrs:describedby
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Subject Item
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rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_1597
wdrs:describedby
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_:vb666735435
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n5:data_1598
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Subject Item
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Subject Item
_:vb666735437
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_3805
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Subject Item
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rdf:type
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owl:onProperty
n5:is_identifier_of
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wdrs:describedby
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Subject Item
_:vb666735439
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0920
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Subject Item
_:vb666735440
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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Subject Item
_:vb666735441
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0950
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0962
wdrs:describedby
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Subject Item
_:vb666735443
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0971
wdrs:describedby
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Subject Item
_:vb666735444
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2976
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735445
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_2977
wdrs:describedby
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Subject Item
_:vb666735446
rdf:type
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owl:onProperty
n5:is_identifier_of
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n5:data_1235
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Subject Item
_:vb666735447
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735448
rdf:type
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owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1354
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Subject Item
_:vb666735449
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_1364
wdrs:describedby
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Subject Item
_:vb666735450
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_0874
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735451
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735452
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735453
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_1355
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735454
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735455
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735456
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_0957
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735457
rdf:type
owl:Axiom
rdfs:comment
A protein entity has the MIRIAM data type 'UniProt', and an enzyme has the MIRIAM data type 'Enzyme Nomenclature'.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
n5:example
owl:annotatedSource
n5:data_1165
owl:annotatedTarget
UniProt|Enzyme Nomenclature
Subject Item
_:vb666735458
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0623
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735459
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0121
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735460
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0102
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735461
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735462
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0160
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735463
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0199
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735464
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0097
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735465
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_2814
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735466
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0152
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735467
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0153
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735468
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0154
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735469
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0097
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735470
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0736
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735471
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_0203
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735472
rdf:type
owl:Restriction
owl:onProperty
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n5:topic_0634
wdrs:describedby
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Subject Item
_:vb666735473
rdf:type
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owl:someValuesFrom
n5:topic_0154
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735474
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_3065
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735475
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_2530
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735476
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
owl:someValuesFrom
n5:data_2012
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735477
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_0102
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735478
rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
owl:someValuesFrom
n5:topic_0080
wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735479
rdf:type
owl:Axiom
rdfs:comment
Closely related, but focusing on labeling and human readability but not on identification.
wdrs:describedby
n3:topic_3676
owl:annotatedProperty
obo:hasBroadSynonym
owl:annotatedSource
n5:data_2099
owl:annotatedTarget
rdfs:label
Subject Item
_:vb666735480
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n5:is_identifier_of
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n5:data_2978
wdrs:describedby
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Subject Item
_:vb666735481
rdf:type
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owl:onProperty
n5:is_identifier_of
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wdrs:describedby
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Subject Item
_:vb666735482
rdf:type
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owl:onProperty
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n5:data_1597
wdrs:describedby
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Subject Item
_:vb666735483
rdf:type
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owl:onProperty
n5:is_identifier_of
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wdrs:describedby
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Subject Item
_:vb666735484
rdf:type
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n5:data_1274
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Subject Item
_:vb666735485
rdf:type
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owl:onProperty
n5:is_identifier_of
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wdrs:describedby
n3:topic_3676
Subject Item
_:vb666735486
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_1598
wdrs:describedby
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Subject Item
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rdf:type
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Subject Item
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rdf:type
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owl:onProperty
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Subject Item
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Subject Item
_:vb666735490
rdf:type
owl:Restriction
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wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
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wdrs:describedby
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Subject Item
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rdf:type
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Subject Item
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Subject Item
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wdrs:describedby
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Subject Item
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rdf:type
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owl:onProperty
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n5:data_2852
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:has_topic
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n5:topic_0602
wdrs:describedby
n3:topic_3676
Subject Item
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rdf:type
owl:Restriction
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wdrs:describedby
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_:vb666735498
rdf:type
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Subject Item
_:vb666735499
rdf:type
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owl:onProperty
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rdf:type
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owl:onProperty
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wdrs:describedby
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Subject Item
_:vb666735501
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owl:onProperty
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wdrs:describedby
n3:topic_3676
Subject Item
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rdf:type
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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wdrs:describedby
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Subject Item
_:vb666735504
rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_1622
wdrs:describedby
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Subject Item
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rdf:type
owl:Restriction
owl:onProperty
n5:is_identifier_of
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n5:data_2850
wdrs:describedby
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Subject Item
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A defined data format has its implicit or explicit data model, and EDAM does not distinguish the two. Some data models however do not have any standard way of serialisation into an exchange format, and those are thus not considered formats in EDAM. (Remark: even broader - or closely related - term to 'Data model' would be an 'Information model'.)
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File format denotes only formats of a computer file, but the same formats apply also to data blobs or exchanged messages.
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Operation is a function that is computational. It typically has input(s) and output(s), which are always data.
wdrs:describedby
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owl:annotatedProperty
obo:hasBroadSynonym
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Function
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Computational tool provides one or more operations.
wdrs:describedby
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owl:annotatedProperty
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owl:annotatedSource
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owl:annotatedTarget
Computational tool
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Process can have a function (as its quality/attribute), and can also perform an operation with inputs and outputs.
wdrs:describedby
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owl:annotatedProperty
obo:hasRelatedSynonym
owl:annotatedSource
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Process
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Subject Item
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rdfs:comment
The has_input "Data" (data_0006) may cause visualisation or other problems although ontologically correct. But on the other hand it may be useful to distinguish from nullary operations without inputs.
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